Slides for talks

Brien, C.J. Exposing the confounding in experimental designs to understand and evaluate them, and formulating linear mixed models for analyzing the data from a designed experiment. Presented in September 2023 at The Biometry Hub, The Waite Campus, University of Adelaide, Adelaide. The talk is based on Brien, Sermarini and Demétrio (2023)
Brien, C.J. The analysis of a two-phase experiment involving human subjects using ASReml-R \& asremlPlus Presented at the Australasian Applied Statistics Conference in Inverloch, Victoria, Australia in November 2022. The talk is based on Brien (2022)
Brien, C.J. The design and analysis of a two-phase experiments involving human subjects: a case study Presented at the S.A. Branch meeting of Statistical Society of Australia Inc. in Adelaide in August 2022. The talk is based on Brien (2022)
Brien, C.J., Newell, N.J., Garnett, T., Watts-Williams, S.J., and Berger, B. Smoothing and extraction of traits in the growth analysis of noninvasive phenotypic data. Presented in August 2020 at The Biometry Hub, The Waite Campus, University of Adelaide, Adelaide. The presentation is based on the paper published in Plant Methods.
Brien, C.J. and Rogers, S. Designing comparative experiments using R: I. Concepts in experimental design PowerPoint or pdf; II. Nonorthogonal experimental design PowerPoint or pdf; III. Multiphase and partially replicated (p-rep) designs PowerPoint or pdf. Presented as a one-day workshop at Biometrics by the Botanic Gardens, International Biometric Society, Australasian Region Conference, Adelaide, S.A., in December 2019. The R package dae is available from http://chris.brien.name/rpackages and the package od from http://mmade.org.
Brien, C.J. The R-package asremlPlus: I. Mixed model selection; II. Prediction production & presentation. Presented at the SAGI Symposium, Rottnest Island, W.A., in May 2019. The R package asremlPlus is available from http://chris.brien.name/rpackages.
Brien, C.J. Mimicking anova in reml mixed-modelling of comparative experiments using the R-package asremlPlus. Presented at The Biometry Hub, The Waite Campus, University of Adelaide, Adelaide in September 2018 and a shortened version at the Australasian Applied Statistics Conference held in Rotorua, New Zealand in December 2018. The R script on which the talk is based is in Ladybird.anal.pdf. The Ladybird.dat data.set is available with asremlPlus via data(Ladybird.dat). The R package asremlPlus is available from http://chris.brien.name/rpackages.
Alcarde Sermarini, R. Generating p-rep designs Presented in June 2018 at The Biometry Hub, The Waite Campus, University of Adelaide, Adelaide.
Brien, C.J. Always randomize? Presented in November 2017 at The Biometry Hub, The Waite Campus, University of Adelaide, Adelaide and at Biometrics by the Border, The International Biometric Society Australasian Region Conference, Kingscliffe, NSW.
Brien, C.J. Anatomies of experimental designs: how good is my single-phase design? Presented at The Biometry Hub, The Waite Campus, University of Adelaide, Adelaide in May 2017.
Brien, C.J. Anatomies of experimental designs: a case study for a p/q-rep multiphase design. Presented at the Australasian Applied Statistics Conference held in Barragga Bay, New South Wales in December 2016.
Brien, C.J. Randomizing and checking standard and multiphase designs using the R package dae. Presented at the XXVIIIth International Biometrics Conference held in Victoria, Canada in July 2016.
Brien, C.J. Mixed modelling: things to think about. Presented at The Biometry Hub, The Waite Campus, University of Adelaide, Adelaide in February 2016.
Brien, C.J. Multiphase experiments workshop: design and analysis in R. Presented at The International Biometric Society Australasian Region Conference, Hobart, Australia, in November 2015. The data sets referred to in these notes are available in Workshop2015.zip. (See also Chris Brien's web site for R packages.)
Brien, C.J. Randomization inference for a chain of randomizations. Presented at the School of Mathematics and Statistics, University of St Andrews, St Andrews, Scotland in April 2015.
Brien, C.J. Design and analysis of high-throughput greenhouse experiments. Presented at the I Workshop on Experimental Statistics e IV Encontro dos Alunos do PPG em Estatística e Experimentação Agronômica held at Escola Superior de Agricultura "Luiz de Queiroz" (ESALQ) of the Universidade de São Paulo, Piracicaba, Brazil, in September 2014.
Brien, C.J. A tale of randomization. Presented at Biometrics by the Canals, Mandurah, Western Australia in December 2013.
Brien, C.J., Berger, B., Rabie, H. and Tester, M. Accounting for variation in designing greenhouse experiments. Presented at a seminar at the James Hutton University, Invergowrie, Scotland, and at the Centre fro Plant Integrative Biology, Nottingham, UK in August/September 2013.
Brien, C.J. A tale of randomization: randomization versus mixed model analysis for single and chain randomizations. Presented at a seminar at CSIRO Mathematics, Informatics and Statistics (CMIS), Adelaide, Australia, at the School of Mathematics and Statistics, University of St Andrews, St Andrews, Scotland, both in August 2013, and in a revised version at the I Workshop on Experimental Statistics e IV Encontro dos Alunos do PPG em Estatística e Experimentação Agronômica held at Escola Superior de Agricultura "Luiz de Queiroz" (ESALQ) of the Universidade de São Paulo, Piracicaba, Brazil, in September 2014.
Brien, C.J., Berger, B., Rabie, H. and Tester, M. Accounting for variation in designing high-throughput greenhouse experiments. Presented at Statistics and Its Interaction with Other Disciplines 2013, a conference held in Ho Chi Minh City, Vietnam in June 2013.
Brien, C.J., Berger, B., Rabie, H. and Tester, M. Accounting for variation in designing greenhouse experiments. Presented at the Australasian Applied Statistics Conference 2012 (GenStat & ASReml), Queenstown, NZ, in December 2012.
Brien, C.J., Berger, B., Rabie, H. and Tester, M. Accounting for variation in designing greenhouse experiments. Presented at a seminar at CSIRO Mathematics, Informatics and Statistics (CMIS), Adelaide in October 2012.
Brien, C.J., Harch, B.D., Correll, R.L. and Bailey, R.A. Principles in the design of multiphase experiments with a later laboratory phase: orthogonal designs. Presented at the XXVIth International Biometrics Conference held in Kobe, Japan in August 2012.
Brien, C.J. Robust microarray experiments by design: a multiphase framework. Presented at the Australian Statistics Conference 2012 held in Adelaide, Australia in July 2012.
Brien, C.J., and Demétrio, C.G.B. Formulating mixed models for experiments, including lonitudinal experiments. A seminar presented at Simon Fraser University, Vancouver, Canada in June 2012.
Brien, C.J., Harch, B.D., Correll, R.L. and Bailey, R.A. Principles in the design of multiphase experiments with a later laboratory phase: orthogonal designs. An invited address presented at the 40th Annual Meeting of the Statistical Society of Canada held June 3-6, 2012 at the University of Guelph, Guelph, Canada.
Brien, C.J. Robust microarray experiments by design: a multiphase framework. Presented to the Biomathematics and Bioinformatics Department, Rothamsted Research Harpenden, and to the Systems Biology Centre, University of Warwick, Coventry, U.K. in October 2011.
Brien, C.J. Multiphase experiments in the biological sciences. Presented at the Cambridge Statistical Initiative Special One-Day Meeting held at the Isaac Newton Institute for Mathematical Sciences in October 2011.
Brien, C.J. Robust microarray experiments by design: a multiphase framework. An invited address at Designed Experiments: Recent Advances in Methods and Applications (DEMA 2011) held in Cambridge, U.K. in September 2011.
Brien, C.J., Harch, B.D., Correll, R.L. and Bailey, R.A. Principles in the design of multiphase experiments with a later laboratory phase: orthogonal designs. Presented at the Australian Applied Statistics Conference (Genstat and ASReml) held in Palm Cove, Queensland in July 2011.
Brien, C.J. Factor allocation in gene-expression microarray experiments. An invited address at the 3rd International Conference on Design of Experiments held in Memphis, U.S.A., in May, 2011.
Brien, C.J., Harch, B.D., Correll, R.L. and Bailey, R.A. Principles in the design of multiphase experiments with a later laboratory phase: orthogonal designs. (a longer version) Presented at the AGM of the South Australian region of the Statistical Society of Asutralia, Inc. held in Adelaide in 2011.
Brien, C.J., Harch, B.D., Correll, R.L. and Bailey, R.A. Principles in the design of multiphase experiments with a later laboratory phase: orthogonal designs. An invited address at the 4th ASEARC Conference held in Parramatta, Sydney in February 2011.
Brien, C.J., and Demétrio, C.G.B. Formulating mixed models for experiments, including lonitudinal experiments. An invited address in the JABES Showcase session at the XXVth International Biometrics Conference held in Florianópolis, Brazil in December 2010.
Brien, C.J., and Demétrio, C.G.B. Formulating mixed models for experiments, including lonitudinal experiments. Slides for an expanded version of this work at Departmento de Ciêncas Exatas in Escola Superior de Agricultura "Luiz de Queiroz" (ESALQ) of the Universidade de São Paulo, Piracicaba, Brazil and at CSIRO Mathematics, Informatics and Statistics (CMIS), Adelaide.
Brien, C.J. Tiers in gene expression microarray experiments. An expanded version presented at Departmento de Ciêncas Exatas in Escola Superior de Agricultura "Luiz de Queiroz" (ESALQ) of the Universidade de São Paulo, Piracicaba, Brazil in June, 2010.
Brien, C.J. Multitiered experiments. A short course at the workshop on Advanced Topics in Design of Experiments held at the Isaac Newton Institute for Mathematical Sciences, Cambridge, UK, on the 21^st - 25^th July, 2008.
- Slides for I. Tiers in the design and analysis of experiments.
- Slides for II. Multiple randomizations.
- Slides for III. Randomization-based analysis of experiments.

Formulating mixed models for experiments, including lonitudinal experiments.

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